Surveillance for highly pathogenic influenza A viruses in California during 2014-2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway.
Identifieur interne : 000080 ( Main/Exploration ); précédent : 000079; suivant : 000081Surveillance for highly pathogenic influenza A viruses in California during 2014-2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway.
Auteurs : Andrew M. Ramey [États-Unis] ; Nichola J. Hill [États-Unis] ; Troy Cline [États-Unis] ; Magdalena Plancarte [États-Unis] ; Susan De La Cruz [États-Unis] ; Michael L. Casazza [États-Unis] ; Joshua T. Ackerman [États-Unis] ; Joseph P. Fleskes [États-Unis] ; T Winston Vickers [États-Unis] ; Andrew B. Reeves [États-Unis] ; Frances Gulland [États-Unis] ; Christine Fontaine [États-Unis] ; Diann J. Prosser [États-Unis] ; Jonathan A. Runstadler [États-Unis] ; Walter M. Boyce [États-Unis]Source :
- Emerging microbes & infections [ 2222-1751 ] ; 2017.
Descripteurs français
- KwdFr :
- Amériques (épidémiologie), Analyse de séquence d'ADN, Analyse spatio-temporelle, Animaux, Californie (épidémiologie), Canada (épidémiologie), Flambées de maladies (médecine vétérinaire), Grippe chez les oiseaux (transmission), Grippe chez les oiseaux (virologie), Grippe chez les oiseaux (épidémiologie), Génome viral, Infections à Orthomyxoviridae (médecine vétérinaire), Infections à Orthomyxoviridae (virologie), Infections à Orthomyxoviridae (épidémiologie), Oiseaux (virologie), Phylogénie, Sous-type H5N1 du virus de la grippe A (génétique), Sous-type H5N1 du virus de la grippe A (isolement et purification), Virus de la grippe A (génétique), Virus de la grippe A (isolement et purification), Virus de la grippe A (pathogénicité), Virus recombinants, Épidémiosurveillance (médecine vétérinaire), Évolution moléculaire.
- MESH :
- génétique : Sous-type H5N1 du virus de la grippe A, Virus de la grippe A.
- isolement et purification : Sous-type H5N1 du virus de la grippe A, Virus de la grippe A.
- médecine vétérinaire : Flambées de maladies, Infections à Orthomyxoviridae, Épidémiosurveillance.
- pathogénicité : Virus de la grippe A.
- virologie : Grippe chez les oiseaux, Infections à Orthomyxoviridae, Oiseaux.
- épidémiologie : Amériques, Californie, Canada, Grippe chez les oiseaux, Infections à Orthomyxoviridae.
- Analyse de séquence d'ADN, Analyse spatio-temporelle, Animaux, Génome viral, Phylogénie, Virus recombinants, Évolution moléculaire.
English descriptors
- KwdEn :
- Americas (epidemiology), Animals, Birds (virology), California (epidemiology), Canada (epidemiology), Caniformia (virology), Disease Outbreaks (veterinary), Epidemiological Monitoring (veterinary), Evolution, Molecular, Genome, Viral, Influenza A Virus, H5N1 Subtype (genetics), Influenza A Virus, H5N1 Subtype (isolation & purification), Influenza A virus (genetics), Influenza A virus (isolation & purification), Influenza A virus (pathogenicity), Influenza in Birds (epidemiology), Influenza in Birds (transmission), Influenza in Birds (virology), Orthomyxoviridae Infections (epidemiology), Orthomyxoviridae Infections (veterinary), Orthomyxoviridae Infections (virology), Phylogeny, Reassortant Viruses, Sequence Analysis, DNA, Spatio-Temporal Analysis.
- MESH :
- epidemiology : Americas, California, Canada, Influenza in Birds, Orthomyxoviridae Infections.
- genetics : Influenza A Virus, H5N1 Subtype, Influenza A virus.
- isolation & purification : Influenza A Virus, H5N1 Subtype, Influenza A virus.
- pathogenicity : Influenza A virus.
- transmission : Influenza in Birds.
- veterinary : Disease Outbreaks, Epidemiological Monitoring, Orthomyxoviridae Infections.
- virology : Birds, Caniformia, Influenza in Birds, Orthomyxoviridae Infections.
- Animals, Evolution, Molecular, Genome, Viral, Phylogeny, Reassortant Viruses, Sequence Analysis, DNA, Spatio-Temporal Analysis.
Abstract
We used surveillance data collected in California before, concurrent with, and subsequent to an outbreak of highly pathogenic (HP) clade 2.3.4.4 influenza A viruses (IAVs) in 2014-2015 to (i) evaluate IAV prevalence in waterfowl, (ii) assess the evidence for spill-over infections in marine mammals and (iii) genetically characterize low-pathogenic (LP) and HP IAVs to refine inference on the spatiotemporal extent of HP genome constellations and to evaluate possible evolutionary pathways. We screened samples from 1496 waterfowl and 1142 marine mammals collected from April 2014 to August 2015 and detected IAV RNA in 159 samples collected from birds (n=157) and pinnipeds (n=2). HP IAV RNA was identified in three samples originating from American wigeon (Anas americana). Genetic sequence data were generated for a clade 2.3.4.4 HP IAV-positive diagnostic sample and 57 LP IAV isolates. Phylogenetic analyses revealed that the HP IAV was a reassortant H5N8 virus with gene segments closely related to LP IAVs detected in mallards (Anas platyrhynchos) sampled in California and other IAVs detected in wild birds sampled within the Pacific Americas Flyway. In addition, our analysis provided support for common ancestry between LP IAVs recovered from waterfowl sampled in California and gene segments of reassortant HP H5N1 IAVs detected in British Columbia, Canada and Washington, USA. Our investigation provides evidence that waterfowl are likely to have played a role in the evolution of reassortant HP IAVs in the Pacific Americas Flyway during 2014-2015, whereas we did not find support for spill-over infections in potential pinniped hosts.
DOI: 10.1038/emi.2017.66
PubMed: 28874792
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Hill</name><affiliation wicri:level="2"><nlm:affiliation>Massachusetts Institute of Technology, Cambridge, MA 02139, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Massachusetts Institute of Technology, Cambridge, MA 02139</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Cline, Troy" sort="Cline, Troy" uniqKey="Cline T" first="Troy" last="Cline">Troy Cline</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biological Sciences, California State University, Chico, CA 95929, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, California State University, Chico, CA 95929</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Plancarte, Magdalena" sort="Plancarte, Magdalena" uniqKey="Plancarte M" first="Magdalena" last="Plancarte">Magdalena Plancarte</name><affiliation wicri:level="2"><nlm:affiliation>School of Veterinary Medicine, Wildlife Health Center, University of California Davis, One Shields Avenue, Davis, CA 95616, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Veterinary Medicine, Wildlife Health Center, University of California Davis, One Shields Avenue, Davis, CA 95616</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="De La Cruz, Susan" sort="De La Cruz, Susan" uniqKey="De La Cruz S" first="Susan" last="De La Cruz">Susan De La Cruz</name><affiliation wicri:level="2"><nlm:affiliation>US Geological Survey, Western Ecological Research Center, San Francisco Bay Estuary Field Station, 505 Azuar Drive, Vallejo, CA 94592, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Geological Survey, Western Ecological Research Center, San Francisco Bay Estuary Field Station, 505 Azuar Drive, Vallejo, CA 94592</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Casazza, Michael L" sort="Casazza, Michael L" uniqKey="Casazza M" first="Michael L" last="Casazza">Michael L. Casazza</name><affiliation wicri:level="2"><nlm:affiliation>US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Ackerman, Joshua T" sort="Ackerman, Joshua T" uniqKey="Ackerman J" first="Joshua T" last="Ackerman">Joshua T. Ackerman</name><affiliation wicri:level="2"><nlm:affiliation>US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Fleskes, Joseph P" sort="Fleskes, Joseph P" uniqKey="Fleskes J" first="Joseph P" last="Fleskes">Joseph P. Fleskes</name><affiliation wicri:level="2"><nlm:affiliation>US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Vickers, T Winston" sort="Vickers, T Winston" uniqKey="Vickers T" first="T Winston" last="Vickers">T Winston Vickers</name><affiliation wicri:level="2"><nlm:affiliation>School of Veterinary Medicine, Wildlife Health Center, University of California Davis, One Shields Avenue, Davis, CA 95616, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Veterinary Medicine, Wildlife Health Center, University of California Davis, One Shields Avenue, Davis, CA 95616</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Reeves, Andrew B" sort="Reeves, Andrew B" uniqKey="Reeves A" first="Andrew B" last="Reeves">Andrew B. Reeves</name><affiliation wicri:level="2"><nlm:affiliation>US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508</wicri:regionArea><placeName><region type="state">Alaska</region></placeName></affiliation></author><author><name sortKey="Gulland, Frances" sort="Gulland, Frances" uniqKey="Gulland F" first="Frances" last="Gulland">Frances Gulland</name><affiliation wicri:level="2"><nlm:affiliation>The Marine Mammal Center, 2000 Bunker Road, Sausalito, CA 94965, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Marine Mammal Center, 2000 Bunker Road, Sausalito, CA 94965</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Fontaine, Christine" sort="Fontaine, Christine" uniqKey="Fontaine C" first="Christine" last="Fontaine">Christine Fontaine</name><affiliation wicri:level="2"><nlm:affiliation>The Marine Mammal Center, 2000 Bunker Road, Sausalito, CA 94965, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Marine Mammal Center, 2000 Bunker Road, Sausalito, CA 94965</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Prosser, Diann J" sort="Prosser, Diann J" uniqKey="Prosser D" first="Diann J" last="Prosser">Diann J. Prosser</name><affiliation wicri:level="2"><nlm:affiliation>US Geological Survey, Patuxent Wildlife Research Center, Beltsville Lab, 10300 Baltimore Avenue, Beltsville, MD 20705, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Geological Survey, Patuxent Wildlife Research Center, Beltsville Lab, 10300 Baltimore Avenue, Beltsville, MD 20705</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Runstadler, Jonathan A" sort="Runstadler, Jonathan A" uniqKey="Runstadler J" first="Jonathan A" last="Runstadler">Jonathan A. Runstadler</name><affiliation wicri:level="2"><nlm:affiliation>Massachusetts Institute of Technology, Cambridge, MA 02139, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Massachusetts Institute of Technology, Cambridge, MA 02139</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Boyce, Walter M" sort="Boyce, Walter M" uniqKey="Boyce W" first="Walter M" last="Boyce">Walter M. Boyce</name><affiliation wicri:level="2"><nlm:affiliation>School of Veterinary Medicine, Wildlife Health Center, University of California Davis, One Shields Avenue, Davis, CA 95616, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Veterinary Medicine, Wildlife Health Center, University of California Davis, One Shields Avenue, Davis, CA 95616</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">Emerging microbes & infections</title><idno type="eISSN">2222-1751</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Americas (epidemiology)</term><term>Animals</term><term>Birds (virology)</term><term>California (epidemiology)</term><term>Canada (epidemiology)</term><term>Caniformia (virology)</term><term>Disease Outbreaks (veterinary)</term><term>Epidemiological Monitoring (veterinary)</term><term>Evolution, Molecular</term><term>Genome, Viral</term><term>Influenza A Virus, H5N1 Subtype (genetics)</term><term>Influenza A Virus, H5N1 Subtype (isolation & purification)</term><term>Influenza A virus (genetics)</term><term>Influenza A virus (isolation & purification)</term><term>Influenza A virus (pathogenicity)</term><term>Influenza in Birds (epidemiology)</term><term>Influenza in Birds (transmission)</term><term>Influenza in Birds (virology)</term><term>Orthomyxoviridae Infections (epidemiology)</term><term>Orthomyxoviridae Infections (veterinary)</term><term>Orthomyxoviridae Infections (virology)</term><term>Phylogeny</term><term>Reassortant Viruses</term><term>Sequence Analysis, DNA</term><term>Spatio-Temporal Analysis</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Amériques (épidémiologie)</term><term>Analyse de séquence d'ADN</term><term>Analyse spatio-temporelle</term><term>Animaux</term><term>Californie (épidémiologie)</term><term>Canada (épidémiologie)</term><term>Flambées de maladies (médecine vétérinaire)</term><term>Grippe chez les oiseaux (transmission)</term><term>Grippe chez les oiseaux (virologie)</term><term>Grippe chez les oiseaux (épidémiologie)</term><term>Génome viral</term><term>Infections à Orthomyxoviridae (médecine vétérinaire)</term><term>Infections à Orthomyxoviridae (virologie)</term><term>Infections à Orthomyxoviridae (épidémiologie)</term><term>Oiseaux (virologie)</term><term>Phylogénie</term><term>Sous-type H5N1 du virus de la grippe A (génétique)</term><term>Sous-type H5N1 du virus de la grippe A (isolement et purification)</term><term>Virus de la grippe A (génétique)</term><term>Virus de la grippe A (isolement et purification)</term><term>Virus de la grippe A (pathogénicité)</term><term>Virus recombinants</term><term>Épidémiosurveillance (médecine vétérinaire)</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Americas</term><term>California</term><term>Canada</term><term>Influenza in Birds</term><term>Orthomyxoviridae Infections</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Sous-type H5N1 du virus de la grippe A</term><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Sous-type H5N1 du virus de la grippe A</term><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Flambées de maladies</term><term>Infections à Orthomyxoviridae</term><term>Épidémiosurveillance</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="transmission" xml:lang="en"><term>Influenza in Birds</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Disease Outbreaks</term><term>Epidemiological Monitoring</term><term>Orthomyxoviridae Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe chez les oiseaux</term><term>Infections à Orthomyxoviridae</term><term>Oiseaux</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Birds</term><term>Caniformia</term><term>Influenza in Birds</term><term>Orthomyxoviridae Infections</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Amériques</term><term>Californie</term><term>Canada</term><term>Grippe chez les oiseaux</term><term>Infections à Orthomyxoviridae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Evolution, Molecular</term><term>Genome, Viral</term><term>Phylogeny</term><term>Reassortant Viruses</term><term>Sequence Analysis, DNA</term><term>Spatio-Temporal Analysis</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Analyse spatio-temporelle</term><term>Animaux</term><term>Génome viral</term><term>Phylogénie</term><term>Virus recombinants</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We used surveillance data collected in California before, concurrent with, and subsequent to an outbreak of highly pathogenic (HP) clade 2.3.4.4 influenza A viruses (IAVs) in 2014-2015 to (i) evaluate IAV prevalence in waterfowl, (ii) assess the evidence for spill-over infections in marine mammals and (iii) genetically characterize low-pathogenic (LP) and HP IAVs to refine inference on the spatiotemporal extent of HP genome constellations and to evaluate possible evolutionary pathways. We screened samples from 1496 waterfowl and 1142 marine mammals collected from April 2014 to August 2015 and detected IAV RNA in 159 samples collected from birds (n=157) and pinnipeds (n=2). HP IAV RNA was identified in three samples originating from American wigeon (Anas americana). Genetic sequence data were generated for a clade 2.3.4.4 HP IAV-positive diagnostic sample and 57 LP IAV isolates. Phylogenetic analyses revealed that the HP IAV was a reassortant H5N8 virus with gene segments closely related to LP IAVs detected in mallards (Anas platyrhynchos) sampled in California and other IAVs detected in wild birds sampled within the Pacific Americas Flyway. In addition, our analysis provided support for common ancestry between LP IAVs recovered from waterfowl sampled in California and gene segments of reassortant HP H5N1 IAVs detected in British Columbia, Canada and Washington, USA. Our investigation provides evidence that waterfowl are likely to have played a role in the evolution of reassortant HP IAVs in the Pacific Americas Flyway during 2014-2015, whereas we did not find support for spill-over infections in potential pinniped hosts.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28874792</PMID><DateCompleted><Year>2018</Year><Month>05</Month><Day>01</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2222-1751</ISSN><JournalIssue CitedMedium="Internet"><Volume>6</Volume><Issue>9</Issue><PubDate><Year>2017</Year><Month>Sep</Month><Day>06</Day></PubDate></JournalIssue><Title>Emerging microbes & infections</Title><ISOAbbreviation>Emerg Microbes Infect</ISOAbbreviation></Journal><ArticleTitle>Surveillance for highly pathogenic influenza A viruses in California during 2014-2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway.</ArticleTitle><Pagination><MedlinePgn>e80</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/emi.2017.66</ELocationID><Abstract><AbstractText>We used surveillance data collected in California before, concurrent with, and subsequent to an outbreak of highly pathogenic (HP) clade 2.3.4.4 influenza A viruses (IAVs) in 2014-2015 to (i) evaluate IAV prevalence in waterfowl, (ii) assess the evidence for spill-over infections in marine mammals and (iii) genetically characterize low-pathogenic (LP) and HP IAVs to refine inference on the spatiotemporal extent of HP genome constellations and to evaluate possible evolutionary pathways. We screened samples from 1496 waterfowl and 1142 marine mammals collected from April 2014 to August 2015 and detected IAV RNA in 159 samples collected from birds (n=157) and pinnipeds (n=2). HP IAV RNA was identified in three samples originating from American wigeon (Anas americana). Genetic sequence data were generated for a clade 2.3.4.4 HP IAV-positive diagnostic sample and 57 LP IAV isolates. Phylogenetic analyses revealed that the HP IAV was a reassortant H5N8 virus with gene segments closely related to LP IAVs detected in mallards (Anas platyrhynchos) sampled in California and other IAVs detected in wild birds sampled within the Pacific Americas Flyway. In addition, our analysis provided support for common ancestry between LP IAVs recovered from waterfowl sampled in California and gene segments of reassortant HP H5N1 IAVs detected in British Columbia, Canada and Washington, USA. Our investigation provides evidence that waterfowl are likely to have played a role in the evolution of reassortant HP IAVs in the Pacific Americas Flyway during 2014-2015, whereas we did not find support for spill-over infections in potential pinniped hosts.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ramey</LastName><ForeName>Andrew M</ForeName><Initials>AM</Initials><AffiliationInfo><Affiliation>US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hill</LastName><ForeName>Nichola J</ForeName><Initials>NJ</Initials><AffiliationInfo><Affiliation>Massachusetts Institute of Technology, Cambridge, MA 02139, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cline</LastName><ForeName>Troy</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, California State University, Chico, CA 95929, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Plancarte</LastName><ForeName>Magdalena</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>School of Veterinary Medicine, Wildlife Health Center, University of California Davis, One Shields Avenue, Davis, CA 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>De La Cruz</LastName><ForeName>Susan</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>US Geological Survey, Western Ecological Research Center, San Francisco Bay Estuary Field Station, 505 Azuar Drive, Vallejo, CA 94592, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Casazza</LastName><ForeName>Michael L</ForeName><Initials>ML</Initials><AffiliationInfo><Affiliation>US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ackerman</LastName><ForeName>Joshua T</ForeName><Initials>JT</Initials><AffiliationInfo><Affiliation>US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fleskes</LastName><ForeName>Joseph P</ForeName><Initials>JP</Initials><AffiliationInfo><Affiliation>US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vickers</LastName><ForeName>T Winston</ForeName><Initials>TW</Initials><AffiliationInfo><Affiliation>School of Veterinary Medicine, Wildlife Health Center, University of California Davis, One Shields Avenue, Davis, CA 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Reeves</LastName><ForeName>Andrew B</ForeName><Initials>AB</Initials><AffiliationInfo><Affiliation>US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gulland</LastName><ForeName>Frances</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>The Marine Mammal Center, 2000 Bunker Road, Sausalito, CA 94965, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fontaine</LastName><ForeName>Christine</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>The Marine Mammal Center, 2000 Bunker Road, Sausalito, CA 94965, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Prosser</LastName><ForeName>Diann J</ForeName><Initials>DJ</Initials><AffiliationInfo><Affiliation>US Geological Survey, Patuxent Wildlife Research Center, Beltsville Lab, 10300 Baltimore Avenue, Beltsville, MD 20705, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Runstadler</LastName><ForeName>Jonathan A</ForeName><Initials>JA</Initials><AffiliationInfo><Affiliation>Massachusetts Institute of Technology, Cambridge, MA 02139, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Boyce</LastName><ForeName>Walter M</ForeName><Initials>WM</Initials><AffiliationInfo><Affiliation>School of Veterinary Medicine, Wildlife Health Center, University of California Davis, One Shields Avenue, Davis, CA 95616, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>HHSN266200700010C</GrantID><Acronym>AI</Acronym><Agency>NIAID NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>HHSN272201400006C</GrantID><Acronym>AI</Acronym><Agency>NIAID NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>HHSN272201400008C</GrantID><Acronym>AI</Acronym><Agency>NIAID NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>09</Month><Day>06</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Emerg Microbes Infect</MedlineTA><NlmUniqueID>101594885</NlmUniqueID><ISSNLinking>2222-1751</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000569" MajorTopicYN="N">Americas</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001717" MajorTopicYN="N">Birds</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002140" MajorTopicYN="N">California</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002170" MajorTopicYN="N">Canada</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010872" MajorTopicYN="N">Caniformia</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004196" MajorTopicYN="N">Disease Outbreaks</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="N">veterinary</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D062665" MajorTopicYN="N">Epidemiological Monitoring</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D053124" MajorTopicYN="N">Influenza A Virus, H5N1 Subtype</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000635" MajorTopicYN="Y">transmission</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009976" MajorTopicYN="N">Orthomyxoviridae Infections</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName><QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016865" MajorTopicYN="N">Reassortant Viruses</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D062211" MajorTopicYN="N">Spatio-Temporal Analysis</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>04</Month><Day>13</Day></PubMedPubDate><PubMedPubDate 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Ramey</name></region><name sortKey="Ackerman, Joshua T" sort="Ackerman, Joshua T" uniqKey="Ackerman J" first="Joshua T" last="Ackerman">Joshua T. Ackerman</name><name sortKey="Boyce, Walter M" sort="Boyce, Walter M" uniqKey="Boyce W" first="Walter M" last="Boyce">Walter M. Boyce</name><name sortKey="Casazza, Michael L" sort="Casazza, Michael L" uniqKey="Casazza M" first="Michael L" last="Casazza">Michael L. Casazza</name><name sortKey="Cline, Troy" sort="Cline, Troy" uniqKey="Cline T" first="Troy" last="Cline">Troy Cline</name><name sortKey="De La Cruz, Susan" sort="De La Cruz, Susan" uniqKey="De La Cruz S" first="Susan" last="De La Cruz">Susan De La Cruz</name><name sortKey="Fleskes, Joseph P" sort="Fleskes, Joseph P" uniqKey="Fleskes J" first="Joseph P" last="Fleskes">Joseph P. Fleskes</name><name sortKey="Fontaine, Christine" sort="Fontaine, Christine" uniqKey="Fontaine C" first="Christine" last="Fontaine">Christine Fontaine</name><name sortKey="Gulland, Frances" sort="Gulland, Frances" uniqKey="Gulland F" first="Frances" last="Gulland">Frances Gulland</name><name sortKey="Hill, Nichola J" sort="Hill, Nichola J" uniqKey="Hill N" first="Nichola J" last="Hill">Nichola J. Hill</name><name sortKey="Plancarte, Magdalena" sort="Plancarte, Magdalena" uniqKey="Plancarte M" first="Magdalena" last="Plancarte">Magdalena Plancarte</name><name sortKey="Prosser, Diann J" sort="Prosser, Diann J" uniqKey="Prosser D" first="Diann J" last="Prosser">Diann J. Prosser</name><name sortKey="Reeves, Andrew B" sort="Reeves, Andrew B" uniqKey="Reeves A" first="Andrew B" last="Reeves">Andrew B. Reeves</name><name sortKey="Runstadler, Jonathan A" sort="Runstadler, Jonathan A" uniqKey="Runstadler J" first="Jonathan A" last="Runstadler">Jonathan A. 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|wiki= Wicri/Sante
|area= GrippeCanadaV3
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:28874792
|texte= Surveillance for highly pathogenic influenza A viruses in California during 2014-2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:28874792" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a GrippeCanadaV3
| This area was generated with Dilib version V0.6.35. |  |